With this new release also aPK structures (currently 181 PDBs) have been added to KLIFS after thoroughly refining their reference alignments. All aPK families with a catalytic kinase domain and ePK-like fold (ABC1, PIKK, PI(3)K, and RIO) are now part of KLIFS. The other atypical families (Alpha, Brd, PDHK, and TIF1) are omitted due to the absence of catalytic kinase domains or because they have a non-ePK fold. Please let us know if you spot any mistakes/issues or have any suggestions.
Added
-
Atypical protein kinases have been added
-
ChEMBL (p)EC50 bioactivity data points
-
Search by "Release date" (under structure properties)
-
Search now contains the option to include deprecated/superseded structures
-
Downloads now contain the 3-letter PDB-codes for the ligands
Changed
-
Updated ChEMBL to version v23
-
Fully updated news overview
-
Direct links instead of buttons to detail pages for optimal page indexing
-
Alphanumerical sorting of kinase names, families, and groups
-
Improved the download feature - performance
-
Updated KLIFS knime nodes
Fixed
-
Bug that made the close button of the search results kinome float away on wide screens.
-
Too stringent mobile landing page redirect
-
Erroneous ligand annotations
-
Manually adjusted one structure due to different chain annotations
-
Added a few missing human kinase structures
-
The web services did not return "apo" structures
-
Segmentation issues with partial alternate models and interaction fingerprints
-
Added missing "master" SMILES for a few ligands
-
Bug on the search page for IE11
-
Bug resulting in all potential interactions for three structures